Publications

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Nazari H, Zhang L, Zhu D, Chader GJ, Falabella P, Stefanini F, Rowland T, Clegg DO, Kashani AH, Hinton DR et al..  2015.  Stem cell based therapies for age-related macular degeneration: The promises and the challenges.. Prog Retin Eye Res. 48:1-39.
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McIntosh BE, Brown ME, Duffin BM, Maufort JP, Vereide DT, Slukvin II, Thomson JA.  2015.  Nonirradiated NOD,B6.SCID Il2rγ-/- Kit(W41/W41) (NBSGW) mice support multilineage engraftment of human hematopoietic cells.. Stem Cell Reports. 4(2):171-80.
McAlpine JA, Lu H-T, Wu KC, Knowles SK, Thomson JA.  2014.  Down-regulation of argininosuccinate synthetase is associated with cisplatin resistance in hepatocellular carcinoma cell lines: implications for PEGylated arginine deiminase combination therapy.. BMC Cancer. 14:621.
Magli A, Schnettler E, Swanson SA, Borges L, Hoffman K, Stewart R, Thomson JA, Keirstead SA, Perlingeiro RCR.  2014.  Pax3 and Tbx5 specify whether PDGFRα+ cells assume skeletal or cardiac muscle fate in differentiating embryonic stem cells.. Stem Cells. 32(8):2072-83.
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Lin TC, Seiler MJ, Zhu D, Falabella P, Hinton DR, Clegg DO, Humayun MS, Thomas BB.  2017.  Assessment of Safety and Functional Efficacy of Stem Cell-Based Therapeutic Approaches Using Retinal Degenerative Animal Models. Stem Cells International. In Press
Leng N, Choi J, Chu L-F, Thomson JA, Kendziorski C, Stewart R.  2016.  OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.. Bioinformatics.
Leng N, Li Y, McIntosh BE, Nguyen BKim, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C.  2015.  EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.. Bioinformatics. 31(16):2614-22.
Leach LL, Buchholz DE, Nadar VP, Lowenstein SE, Clegg DO.  2015.  Canonical/β-catenin Wnt pathway activation improves retinal pigmented epithelium derivation from human embryonic stem cells.. Invest Ophthalmol Vis Sci. 56(2):1002-13.
Leach LL, Clegg DO.  2015.  Concise Review: Making Stem Cells Retinal: Methods for Deriving Retinal Pigment Epithelium and Implications for Patients With Ocular Disease.. Stem Cells. 33(8):2363-73.
Lane A, Philip LRachel, Ruban L, Fynes K, Smart M, Carr A, Mason C, Coffey P.  2014.  Engineering Efficient Retinal Pigment Epithelium Differentiation From Human Pluripotent Stem Cells.. Stem Cells Transl Med.
Lalit PA, Salick MR, Nelson DO, Squirrell JM, Shafer CM, Patel NG, Saeed I, Schmuck EG, Markandeya YS, Wong R et al..  2016.  Lineage Reprogramming of Fibroblasts into Proliferative Induced Cardiac Progenitor Cells by Defined Factors.. Cell Stem Cell. 18(3):354-67.
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Jung YKyung, Woo M-A, H Soh T, Park HGyu.  2014.  Aptamer-based cell imaging reagents capable of fluorescence switching.. Chem Commun (Camb). 50(82):12329-32.
Jiang P, Meyer S, Hou Z, Propson NE, H Soh T, Thomson JA, Stewart R.  2014.  MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers.. Bioinformatics. 30(18):2665-7.
Jakobsson O, Oh SSoo, Antfolk M, Eisenstein M, Laurell T, H Soh T.  2015.  Thousand-fold volumetric concentration of live cells with a recirculating acoustofluidic device.. Anal Chem. 87(16):8497-502.
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Huang X, Hu Q, Braun GB, Pallaoro A, Morales DP, Zasadzinski J, Clegg DO, Reich NO.  2015.  Light-activated RNA interference in human embryonic stem cells.. Biomaterials. 63:70-9.
Hsieh K, B Ferguson S, Eisenstein M, Plaxco KW, H Soh T.  2015.  Integrated electrochemical microsystems for genetic detection of pathogens at the point of care.. Acc Chem Res. 48(4):911-20.
Hsieh K, Mage PL, Csordas AT, Eisenstein M, H Soh T.  2014.  Simultaneous elimination of carryover contamination and detection of DNA with uracil-DNA-glycosylase-supplemented loop-mediated isothermal amplification (UDG-LAMP).. Chem Commun (Camb). 50(28):3747-9.
Howden SE, Thomson JA.  2014.  Gene targeting of human pluripotent stem cells by homologous recombination.. Methods Mol Biol. 1114:37-55.
Howden SE, Maufort JP, Duffin BM, Elefanty AG, Stanley EG, Thomson JA.  2015.  Simultaneous Reprogramming and Gene Correction of Patient Fibroblasts.. Stem Cell Reports. 5(6):1109-18.
Hou Z, Jiang P, Swanson SA, Elwell AL, Nguyen BKim S, Bolin JM, Stewart R, Thomson JA.  2015.  A cost-effective RNA sequencing protocol for large-scale gene expression studies.. Sci Rep. 5:9570.
Hou Z, Meyer S, Propson NE, Nie J, Jiang P, Stewart R, Thomson JA.  2015.  Characterization and target identification of a DNA aptamer that labels pluripotent stem cells.. Cell Res. 25(3):390-3.
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Friend K, Brooks HA, Propson NE, Thomson JA, Kimble J.  2015.  Embryonic Stem Cell Growth Factors Regulate eIF2α Phosphorylation.. PLoS One. 10(9):e0139076.
Forest DL, Johnson LV, Clegg DO.  2015.  Cellular models and therapies for age-related macular degeneration.. Dis Model Mech. 8(5):421-7.
Fernandes RABrant, Koss MJanusz, Falabella P, Stefanini FRosa, Maia M, Diniz B, Ribeiro R, Hu Y, Hinton D, Clegg DO et al..  2016.  An Innovative Surgical Technique for Subretinal Transplantation of Human Embryonic Stem Cell-Derived Retinal Pigmented Epithelium in Yucatan Mini Pigs: Preliminary Results.. Ophthalmic Surg Lasers Imaging Retina. 47(4):342-51.
Ferguson BScott, Hoggarth DA, Maliniak D, Ploense K, White RJ, Woodward N, Hsieh K, Bonham AJ, Eisenstein M, Kippin TE et al..  2013.  Real-time, aptamer-based tracking of circulating therapeutic agents in living animals.. Sci Transl Med. 5(213):213ra165.

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