Publications

Found 39 results
Author Title Type [ Year(Desc)]
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2014
Sengupta S, Johnson BPatrick, Swanson SAllen, Stewart R, Bradfield CAlan, Thomson JAlexander.  2014.  Aggregate culture of human embryonic stem cell-derived hepatocytes in suspension are an improved in vitro model for drug metabolism and toxicity testing.. Toxicol Sci. 140(1):236-45.
Shi X, Richard J, Zirbes KM, Gong W, Lin G, Kyba M, Thomson JA, Koyano-Nakagawa N, Garry DJ.  2014.  Cooperative interaction of Etv2 and Gata2 regulates the development of endothelial and hematopoietic lineages.. Dev Biol. 389(2):208-18.
Elcheva I, Brok-Volchanskaya V, Kumar A, Liu P, Lee J-H, Tong L, Vodyanik M, Swanson S, Stewart R, Kyba M et al..  2014.  Direct induction of haematoendothelial programs in human pluripotent stem cells by transcriptional regulators.. Nat Commun. 5:4372.
Elcheva I, Brok-Volchanskaya V, Kumar A, Liu P, Lee J-H, Tong L, Vodyanik M, Swanson S, Stewart R, Kyba M et al..  2014.  Direct induction of haematoendothelial programs in human pluripotent stem cells by transcriptional regulators.. Nat Commun. 5:4372.
McAlpine JA, Lu H-T, Wu KC, Knowles SK, Thomson JA.  2014.  Down-regulation of argininosuccinate synthetase is associated with cisplatin resistance in hepatocellular carcinoma cell lines: implications for PEGylated arginine deiminase combination therapy.. BMC Cancer. 14:621.
Thomson JA, Burkholder DA, Heithaus MR, Fourqurean JW, Fraser MW, Statton J, Kendrick GA.  2014.  Extreme temperatures, foundation species, and abrupt ecosystem change: an example from an iconic seagrass ecosystem.. Glob Chang Biol.
Howden SE, Thomson JA.  2014.  Gene targeting of human pluripotent stem cells by homologous recombination.. Methods Mol Biol. 1114:37-55.
Belair DG, Whisler JA, Valdez J, Velazquez J, Molenda JA, Vickerman V, Lewis R, Daigh C, Hansen TD, Mann DA et al..  2014.  Human Vascular Tissue Models Formed from Human Induced Pluripotent Stem Cell Derived Endothelial Cells.. Stem Cell Rev.
Shepherd DN, Dugdale B, Martin DP, Varsani A, Lakay FM, Bezuidenhout ME, Monjane AL, Thomson JA, Dale J, Rybicki EP.  2014.  Inducible resistance to maize streak virus.. PLoS One. 9(8):e105932.
Capowski EE, Simonett JM, Clark EM, Wright LS, Howden SE, Wallace KA, Petelinsek AM, Pinilla I, M Phillips J, Meyer JS et al..  2014.  Loss of MITF expression during human embryonic stem cell differentiation disrupts retinal pigment epithelium development and optic vesicle cell proliferation.. Hum Mol Genet.
M Phillips J, Perez ET, Martin JM, Reshel ST, Wallace KA, Capowski EE, Singh R, Wright LS, Clark EM, Barney PM et al..  2014.  Modeling human retinal development with patient-specific induced pluripotent stem cells reveals multiple roles for visual system homeobox 2.. Stem Cells. 32(6):1480-92.
Jiang P, Meyer S, Hou Z, Propson NE, H Soh T, Thomson JA, Stewart R.  2014.  MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers.. Bioinformatics. 30(18):2665-7.
Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA.  2014.  NANOG Is Multiply Phosphorylated and Directly Modified by ERK2 and CDK1 In Vitro.. Stem Cell Reports. 2(1):18-25.
Magli A, Schnettler E, Swanson SA, Borges L, Hoffman K, Stewart R, Thomson JA, Keirstead SA, Perlingeiro RCR.  2014.  Pax3 and Tbx5 specify whether PDGFRα+ cells assume skeletal or cardiac muscle fate in differentiating embryonic stem cells.. Stem Cells. 32(8):2072-83.
Croze RH, Buchholz DE, Radeke MJ, Thi WJ, Hu Q, Coffey PJ, Clegg DO.  2014.  ROCK Inhibition Extends Passage of Pluripotent Stem Cell-Derived Retinal Pigmented Epithelium.. Stem Cells Transl Med.
2015
Cho M, Oh SSoo, Nie J, Stewart R, Radeke MJ, Eisenstein M, Coffey PJ, Thomson JA, H Soh T.  2015.  Array-based discovery of aptamer pairs.. Anal Chem. 87(1):821-8.
Hou Z, Meyer S, Propson NE, Nie J, Jiang P, Stewart R, Thomson JA.  2015.  Characterization and target identification of a DNA aptamer that labels pluripotent stem cells.. Cell Res. 25(3):390-3.
Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AYoung, Ye Z, Kim A, Rajagopal N, Xie W et al..  2015.  Chromatin architecture reorganization during stem cell differentiation.. Nature. 518(7539):331-6.
Hou Z, Jiang P, Swanson SA, Elwell AL, Nguyen BKim S, Bolin JM, Stewart R, Thomson JA.  2015.  A cost-effective RNA sequencing protocol for large-scale gene expression studies.. Sci Rep. 5:9570.
Yamniuk AP, Newitt JA, Doyle ML, Arisaka F, Giannetti AM, Hensley P, Myszka DG, Schwarz FP, Thomson JA, Eisenstein E.  2015.  Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions.. J Biomol Tech. 26(4):125-41.
Leng N, Li Y, McIntosh BE, Nguyen BKim, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C.  2015.  EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.. Bioinformatics. 31(16):2614-22.
Leng N, Li Y, McIntosh BE, Nguyen BKim, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C.  2015.  EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.. Bioinformatics. 31(16):2614-22.
Friend K, Brooks HA, Propson NE, Thomson JA, Kimble J.  2015.  Embryonic Stem Cell Growth Factors Regulate eIF2α Phosphorylation.. PLoS One. 10(9):e0139076.
Pellett S, Schwartz MP, Tepp WH, Josephson R, Scherf JM, Pier CL, Thomson JA, Murphy WL, Johnson EA.  2015.  Human Induced Pluripotent Stem Cell Derived Neuronal Cells Cultured on Chemically-Defined Hydrogels for Sensitive In Vitro Detection of Botulinum Neurotoxin.. Sci Rep. 5:14566.
Pellett S, Schwartz MP, Tepp WH, Josephson R, Scherf JM, Pier CL, Thomson JA, Murphy WL, Johnson EA.  2015.  Human Induced Pluripotent Stem Cell Derived Neuronal Cells Cultured on Chemically-Defined Hydrogels for Sensitive In Vitro Detection of Botulinum Neurotoxin.. Sci Rep. 5:14566.

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